Beyond borders: plasmids drive a shared antibiotic resistome in European urban water systems
Wanli He, Ziqi Wu et.al. (2024). "doi.org/10.1186/s40168-025-02253-0." Microbiome . 14:39.
CV
Education
- Ph.D in Biology, University of Copenhagen & Southern University of Science and Technology, Feb.2024
- M.S. in Environmental Engineering and Management, The Hong Kong University of Science and Technology, Nov. 2017
- B.S. in Environmental Science, Hunan University, Jun. 2016
Work experience
- Summer 2024: Postdoc
- Shezhen CDC
- Reserach focus: wastewater-based epidemiology
- Supervisor: Mrs. Qinghua Hu
- Fall 2017: Research Assistant
- Southern University of Science and Technology
- Reserach focus: Nanopore seuqencing application, AMR, ARB
- Supervisor: Professor Yu XIA
Skills
- Molecular and Microbiological Techniques
- Nanopore sequence
- Illumina（Miseq）sequencing
- Whole-genome sequencing
- Metagenomics
- PCR and qPCR
- Microbial isolation and culturing
- Flow cytometry-assisted plasmid capture
- DNA extraction and molecular cloning
- Bioinformatics and Data Analysis
- Metagenomic analysis
- Genomic analysis
- Statistical analysis in R
- Python programming
- Linux-based high-performance computing
Publications
Plasmid-driven clonal expansion of multidrugresistant monophasic Salmonella Typhimurium in a Global Food Trade Hub
Dingjie Huang, Ziqi WU et.al. (2025). "doi.org/10.1080/22221751.2025.2542251." Emerging Microbes & Infections.
Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing
Yuhong Sun, Ziqi WU et.al. (2024). "doi/10.1101/gr.277266.122." Genome Research.
Strategies and tools in illumina and nanopore‐integrated metagenomic analysis of microbiome data
Yu Xia, Ziqi Wu et.al. (2022). "doi.org/10.1002/imt2.72." iMeta. 1(2).
Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
Ziqi WU et.al. (2022). "10.1016/j.watres.2022.119282." Water Research . 226(119282).
Talks
American Chemical Society(ACS) Spring 2025
Conference proceedings presentation at American Chemical Society(ACS) Spring 2025, San Diego, California, USA
The International Conference on Bacteria and Global Health
Poster Presentation at SUSTech, Shenzhen, Guangdong, China, Shenzhen, Guangdong, China
Prokaryotic Pathogen Seminar Series
Oral Presentation at Online Seminar, Online, US
London Calling 2018
Conference at Old Billingsgate, Old Billingsgate, London, UK
Teaching
Language
- Mandarin Chinese
- Cantonese
- English